How to calculate payroll taxes for small business

LAST REVIEWED Apr 17 2024
15 MIN READEditorial Policy

Understanding payroll taxes is crucial for ensuring your employees are paid on time and ensuring your business is compliant with tax laws. We’ll equip you with the knowledge and tools to navigate payroll taxes efficiently by providing the basics of how payroll taxes work and how to calculate them, and tips for avoiding payroll tax penalties. 

What are payroll taxes?

The purpose of payroll taxes is to fund various government assistance programs like Medicare, Social Security, and unemployment benefits. They are deducted from employee wages.

Both employers and employees share the responsibility for these taxes, but in some instances, the employer bears the sole burden. Understanding who qualifies as a taxable employee is crucial for businesses; typically, this includes anyone whose earnings are subject to income and payroll taxes. 

The IRS provides guidelines to help distinguish between employees and independent contractors, aiding employers in determining their tax obligations accurately.

What taxes do small business owners need to pay?

For small business owners, it's important to be aware of all federal, state, and local tax requirements. Since these can vary significantly depending on where the business operates, consulting with a licensed tax professional can clarify what taxes need to be paid, ensuring compliance and preventing potential legal issues.

In general, there are five types of business taxes: 

  1. Income tax

  2. Estimated tax

  3. Self-employment taxes

  4. Employment taxes (if you have employees)

  5. Excise tax (depending on your type of business)

What is the difference between payroll taxes and income taxes?

Payroll taxes are distinct from income taxes in several ways. First off, payroll taxes are charged at flat rates and directly support specific programs for which they're intended, such as Medicare and Social Security. Conversely, income taxes are based on progressive rates that depend on an individual's total income and are allocated to the U.S. Department of the Treasury for various government initiatives. 

Additionally, certain payroll taxes are subject to a wage base limit, meaning there's a maximum amount of income that can be taxed in a given year. Once an employee's earnings surpass this threshold, the specific payroll tax is no longer deducted for that year. In contrast, income taxes do not have a wage base limit, applying to an individual's entire income regardless of the amount.

Types of small business payroll taxes

For small business owners, navigating through the myriad of payroll taxes can seem daunting. However, understanding that these taxes are proportionally based on employee wages can simplify the approach. The most commonly encountered payroll taxes include:

1. Federal Insurance Contribution Act (FICA) taxes

FICA taxes are a cornerstone of the payroll tax system, covering both Social Security and Medicare. Together, these taxes sum to 15.3% of an employee's gross earnings. Specifically, 12.4% is allocated to Social Security, while the remaining 2.9% funds Medicare. This responsibility is split evenly between employers and employees, each contributing 7.65% towards FICA taxes. 

An important detail to remember is the wage base limit for Social Security, which is currently set at $168,600. Earnings above this threshold are not subject to Social Security taxes for the remainder of the year. However, Medicare taxes do not share this cap and are applied to all earnings.

Note: There's an additional Medicare Tax for employees with higher earnings. This tax, an extra 0.9%, affects single filers earning more than $200,000 annually, married couples filing jointly with incomes over $250,000, and married individuals filing separately who earn more than $125,000. Employers must withhold this additional tax from employees who meet these criteria, but they are not required to match this extra contribution.

2. Federal Unemployment Tax Act (FUTA) taxes Small businesses generally are subject to FUTA if they pay $1,500 or more to employees in any calendar quarter or have one or more employees for at least some part of a day in 20 or more different weeks. The rate is 6% on the first $7,000 that an employee earns per year and is paid only by employers.

3. State Unemployment Tax Act (SUTA) taxes States have their own unemployment programs, each with different tax rates. The good news, however, is that if employers pay SUTA on time and aren’t in a credit reduction state, they may be eligible for a federal tax credit of 5.4%, effectively lowering their FUTA rate to 0.6%. SUTA tax liability, as with FUTA, only applies to employers, except in a handful of states where employees also contribute.

4. State and local payroll taxes Depending on where in the country a business employs people, it may have to pay additional payroll taxes for short-term disability, paid family medical leave, and other assistance programs. Employers should check with their local governments or a licensed tax professional for the latest rates and criteria.

Calculating payroll taxes for small businesses

Running a small business involves not only managing day-to-day operations, but also handling the critical responsibility of withholding payroll taxes. This process demands meticulous attention to detail and a comprehensive understanding of tax regulations to ensure compliance with the law and contribute to the smooth operation of government programs.

1. Understanding Employee Tax Information

Ensuring accurate payroll tax withholding begins with a solid understanding of employee tax information. The importance of Form W-4 for federal income tax withholding cannot be overstated. Additionally, navigating state and local tax regulations requires awareness of the relevant forms for state and local income taxes. These vary from state to state.

2. Calculating Gross Pay for Employees

Determining gross pay involves considering various components, including overtime and bonuses. The role of pay periods in calculating annual salary is crucial for accurate payroll calculations.

3. Federal Income Tax Withholding

Utilizing resources like IRS Publication 15-T becomes essential for precision in federal income tax withholding. Employers must be adept at applying the correct rates based on each employee's earnings and filing status.

4. Understanding FICA Taxes

FICA taxes, encompassing Social Security and Medicare taxes, require careful consideration. Awareness of additional Medicare tax implications is vital for accurate calculations.

5. State and Local Tax Considerations

Navigating the variability of state income tax and local taxes across jurisdictions can be challenging. Small business owners must stay informed about the specific tax regulations applicable to their location.

6. Other Deductions from Employees’ Paychecks

Distinguishing between pre-tax and post-tax deductions, managing benefits contributions, and addressing garnishments are integral aspects of payroll tax management.

7. Finalizing Net Pay and Employer Responsibilities

The process concludes with calculating net pay by subtracting withholdings and deductions. Small business owners bear the responsibility of ensuring accurate and transparent payroll processes, fostering trust between employers and employees.

Withholding Small Business Payroll Taxes

Maintaining up-to-date records for all employees is a key strategy in successful tax withholding. This involves tracking changes in marital status, dependents, or any factors influencing tax withholding amounts. Updated records minimize the risk of errors, penalties, and contribute to a positive relationship between employers and employees.

Life-changing events such as marriage, divorce, birth of a child, or other significant changes can impact an employee's tax liability. When an employer becomes aware that an employee has experienced a life-changing event that affects their tax situation, the employer may need to adjust the employee's withholdings. 

In such cases, employers should follow the guidance provided by the IRS. If an employee experiences a life-changing event and has not yet submitted an updated Form W-4 reflecting the changes, the employer may need to use the default withholding status until the updated form is received. The default status is typically the "Single" filing status, which results in higher tax withholding.

It's important for employers to communicate with employees about the need to update their Form W-4 after significant life events and to provide the necessary forms promptly. This ensures that the withholding accurately reflects the employee's current tax situation. Employers should encourage employees to review and update their Form W-4 whenever there are changes in their personal or financial circumstances to avoid potential under-withholding or over-withholding of taxes.

Reporting and Paying Payroll Taxes

The culmination of payroll tax management involves fulfilling reporting and payment obligations. Small business owners must file Form 940 annually for Federal Unemployment Tax Act (FUTA) taxes and Form 941 quarterly for federal income taxes, Social Security, and Medicare taxes. Specific state filings may also be required based on the business's location and the nature of state-level taxes owed. These forms serve as crucial documentation for taxes withheld from employee wages and taxes paid by the employer throughout the year.

Efficient Tax Payment and Reporting Systems

The Electronic Federal Tax Payment System (EFTPS) simplifies the process of paying federal taxes for businesses, offering a secure and efficient online platform for scheduling payments in advance. Its reliability and ease of use make it an invaluable tool for meeting federal tax obligations promptly, thereby minimizing the risk of penalties due to late payments.

The requirements for state and local tax obligations can differ widely across jurisdictions. Employers must proactively understand and comply with their state's specific tax reporting and payment guidelines and any localities in which they operate. This often includes registering with relevant tax agencies, utilizing designated payment systems, and following specific filing timelines. Keeping abreast of these varying state and local guidelines is vital to ensure full compliance and to prevent potential legal implications related to tax reporting and payment.

What happens if payroll tax payments are late or unpaid?

When payroll tax payments are delayed or remain unpaid, the consequences can be both immediate and severe, affecting not just the business but potentially its owners directly. Late or unpaid taxes inevitably incur penalties and interest, escalating the total amount owed beyond the original tax liabilities. These penalties are not just financial; they can also include legal repercussions, depending on the severity and duration of the delinquency.

Furthermore, business owners might face personal liability for unpaid payroll taxes. The IRS can assess the Trust Fund Recovery Penalty (TFRP), which holds individuals personally responsible for unpaid employee tax withholdings. This means that the financial burden of these taxes can extend beyond the business's assets to the owner's or officers' personal assets, underscoring the critical nature of adhering to payroll tax deadlines.

How can employers avoid payroll tax penalties?

To start, staying informed about the latest changes in tax rates and regulations is crucial. Tax laws are subject to frequent updates, and being aware of these changes ensures that employers can adjust their payroll systems accordingly, maintaining compliance and avoiding penalties.

Technology also plays a pivotal role in streamlining payroll tax payments and reporting. Modern payroll services and software automate much of the process, reducing the likelihood of errors and late fees. These solutions often contain features that alert employers to upcoming deadlines, accurately calculate tax obligations, and even facilitate direct payments through platforms like the Electronic Federal Tax Payment System (EFTPS). By embracing these technological tools, employers can significantly mitigate the risk of payroll tax issues.

Additional considerations for small business owners

Employers can establish a robust framework for managing their payroll taxes by staying informed, leveraging technology, and seeking expert advice. This proactive approach not only helps avoid penalties but also supports the overall financial health and stability of the business.


This content has been prepared for informational purposes only, and should not be construed as tax, legal, or individualized investment advice. Neither Human Interest Inc. nor Human Interest Advisors LLC provides tax or legal advice. Consult an appropriate professional regarding your situation. The views expressed are subject to change. In the event third-party data and/or statistics are used, they have been obtained from sources believed to be reliable; however, we cannot guarantee their accuracy or completeness.

Abigail Church, HR Business Partner at GrowthLab Financial, brings a wealth of experience from her 12 years working for global corporations before transitioning her focus to small businesses. She adeptly aligns HR strategies with the company's overall objectives while also addressing critical aspects of payroll management and regulatory compliance.

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